How to fix "Mixed shard index types" on new _internal db?

Nov 27 14:31:07 db1 influxd: ts=2018-11-27T13:31:07.796422Z lvl=warn msg="Mixed shard index types" log_id=0C1Lgl6W000 service=store tsi1_count=1 inmem_count=4 db_instance=_internal

How can I fix this? Maybe it is also related to the deleting?